Sebastian Briesemeister

Research Interest:

• protein subcellular location prediction

• Bayesian learning methods

• interpretable machine learning

• protein structure modeling

• fixed-parameter algorithms in Bioinformatics

Publications:

2009

Briesemeister, S, Blum, T, Brady, S, Lam, Y, Kohlbacher, O, and Shatkay, H (2009).
SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins
J. Proteome Res., 8(11):5363–5366.

Blum, T, Briesemeister, S, and Kohlbacher, O (2009).
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
BMC Bioinformatics, 10:274.

Böcker, S, Briesemeister, S, and Klau, GW (2009).
Exact Algorithms for Cluster Editing: Evaluation and Experiments
Algorithmica,(published online).

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2009).
Going Weighted: Parameterized Algorithms for Cluster Editing
Theoretical Computer Science, 410(52):5467-5480.

Böcker, S, Briesemeister, S, and Klau, GW (2009). 
On Optimal Comparability Editing with Applications to Molecular Diagnostics
BMC Bioinformatics, 10(Suppl 1):S61.

2008

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2008).
Going Weighted: Parameterized Algorithms for Cluster Editing
In: Proc. of Conference on Combinatorial Optimization and Applications (COCOA 2008),volume 5165, pp. 1-12, Lect. Notes Comput. Sc., Springer.

Böcker, S, Briesemeister, S, and Klau, GW (2008).
Exact Algorithms for Cluster Editing: Evaluation and Experiments
In: Proc. of Workshop on Experimental Algorithms (WEA 2008), pp. 289–302, Springer.

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2008).
A fixed-parameter approach for Weighted Cluster Editing
In: Proc. of Asia-Pacific Bioinformatics Conference (APBC 2008), volume 5, pp. 211-220, Imperial College Press.

Software:

• Transitivity Editing FPT Tool (aka Comparability Editing) (C++ source code)

• MultiLoc2 Webservice

• SherLoc2 Webservice

Presentations:

• WEA 2008: 7th International Workshop on Experimental Algorithms. May 30-June 1, 2008. Provincetown, Cape Cod, Massachusetts, USA 

  Download Talk

Posters:

• MultiLoc2 and SherLoc2 presented at RECOMB 2009

Teaching: