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Wilhelm Schickard Institute for Computer Science
Div. for Simulation of Biological Systems
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SherLoc - Predicting Protein Subcellular Localization


Choose prediction method:


Sequence id (optional):


Sequence (Paste your amino acid sequence in one letter code):


OR


Submit a fasta file containing sequences (maximum 20 entries):



Select an E-Value for BLAST:

Output format:
Simple: Only top predicted localization with final score (probability estimate)

Advanced: Top 3 predicted localizations with final scores as well as detailed results of the subprediction methods




Reference

Höglund, A, Blum, T, Brady, S, Dönnes, P, Miguel, JS, Rocheford, M, Kohlbacher, O, and Shatkay, H (2006). Significantly improved prediction of subcellular localization by integrating text and protein sequence data In: Proceedings of the Pacific Symposium on Biocomputing (PSB 2006). PSB.