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Publications from the Kohlbacher lab, sorted by year and author.
[16] Neumann, D, Kohlbacher, O, Lenhof, H, and Lehr, C (2002). Protein-sugar interactions: Calculated versus experimental binding energies Eur. J. Biochem., 269(5):1518-1524.
[15] Sirava, M, Schäfer, T, Eiglsperger, M, Kaufmann, M, Kohlbacher, O, Bornberg-Bauer, E, and Lenhof, H (2002). BioMiner - modeling, analysing, and visualizing biochemical pathways and networks Bioinformatics, 19(10):S219-230.
[14] Kohlbacher, O (2001). BALL - A Framework for Rapid Application Development in Molecular Modeling In: Beiträge zum Heinz-Billing-Preis 2000, pp. 13-28, Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Göttingen.
[13] Kohlbacher, O, Burchardt, A, Hildebrandt, A, Moll, A, Bayer, P, and Lenhof, H (2001). A NMR-spectra-based scoring function for protein docking In: RECOMB 2001, Proceedings of the Fifth Annual International Conference on Computational Molecular Biology, ed. by David Sankoff and Thomas Lengauer, pp. 169-177, ACM press.
[12] Kohlbacher, O, Burchardt, A, Moll, A, Hildebrandt, A, Bayer, P, and Lenhof, H (2001). Structure prediction of protein complexes by a NMR-based protein docking algorithm J. Biomol. NMR, 20:15-21.
[11] Turner, RJ, Chaturvedi, K, Edwards, NJ, Fasulo, D, Halpern, AL, Huson, DH, Remington, KA, Schwartz, R, Walenz, B, Yooseph, S, and Istrail, S (2001). Visualization Challenges for a New Cyberpharmaceutical Computing Paradigm In: Proceedings of the IEEE Symposium on Parallel and Large-Data Visualization and Graphics (PVG2001), pp. 7–18, San Diego, USA,.
[10] Althaus, E, Kohlbacher, O, Lenhof, H, and Müller, P (2000). A Combinatorial Approach to Protein Docking with Flexible Side-Chains In: RECOMB 2000 – Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, ed. by Ron Shamir and Satoru Miyano and Sorin Istrail and Pavel Pevzner and Michael Waterman, pp. 15–24, ACM press.
[9] Althaus, E, Kohlbacher, O, Lenhof, H, and Müller, P (2000). A branch and cut algorithm for the optimal solution of the side-chain placement problem Max-Planck-Institute für Informatik, Stuhlsatzenhausweg 85, 66123 Saarbrücken, Germany.
[8] Boghossian, NP, Kohlbacher, O, and Lenhof, HP (2000). Rapid software prototyping in molecular modeling using the biochemical algorithms library (BALL) J. Exp. Algorithmics, 5:16.
[7] Kohlbacher, O and Lenhof, H (2000). BALL - Rapid Software Prototyping in Computational Molecular Biology Bioinformatics, 16(9,):815–824.
[6] Neumann, D, Kohlbacher, O, Haltner, E, Lenhof, H, and Lehr, C (2000). Modeling the Sugar Lectin Interaction by Computational Chemistry Relevant to Drug Design In: Proc. 3rd World Meeting on Pharmaceutics, Biopharmaceutics and Pharmaceutical Technology, pp. 233.
[5] Adams, CS, Davies, HJ, and Nilse, L (1999). Synchronous Tuning of Extended Cavity Lasers: The Case for an Optimum Pivot Point Appl. Opt., 38(3):548-553.
[4] Boghossian, NP, Kohlbacher, O, and Lenhof, H (1999). BALL: Biochemical Algorithms Library In: Algorithm Engineering, 3rd International Workshop, WAE'99, Proceedings, ed. by Vitter, J.S. and Zaroliagis, C.D., pp. 330-344, Springer.
[3] Boghossian, NP, Kohlbacher, O, and Lenhof, H (1999). BALL: Biochemical Algorithms Library Max-Planck-Institut für Informatik, Saarbrücken, Germany.
[2] Kohlbacher, O and Lenhof, H (1999). Rapid Software Prototyping in Computational Molecular Biology In: Proceedings of the German Conference on Bioinformatics (GCB'99).
[1] Neumann, D, Haltner, E, Lehr, C, Kohlbacher, O, and Lenhof, H (1998). Investigating the Sugar-Lectin Interaction by Computational Chemistry: Tunneling the Epithelial Barrier In: Abstracts of the 18th Interlec Meeting, pp. 549.
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