Alumni
Finished PhD theses/Doktorarbeiten
| Name | Project title |
|---|---|
| Pierre Dönnes | Computational Immunomics: From MHC-Peptide Binding to Immunotherapy |
| Annette Höglund | Computational Approaches for Analyzing the Role of Protein-DNA Interactions in Gene Regulation |
| Andreas Kerzmann |
Finished Master's theses/Diplomarbeiten
| Name | Project title | Tutor(s) |
|---|---|---|
| Cornelia Friedle | Visualisierung und Reduktion von HPLC-MS Daten in OpenMS | Marc |
| Torsten Blum | MultiLoc - an advanced system for predicting subcellular location | Annette |
| Manfred Claassen | Molecular modelling of peptide ligands in HLA-A*0201 complexes | Pierre |
| Mathias Schuler | SNEP: SNP-derived Epitope Prediction | Pierre |
| Volker Mosthaf | Clustering of Tandem MS Spectra | Marc/Oliver |
| Demet Sirim | Methoden des Molecular Modeling - Mit "Scaffold hopping" zu neuen NF-kB-Inhibitoren | Oliver |
| Agata Krasowski | Methoden des Molecular Modeling - Mit "Scaffold hopping" zu neuen Leitstrukturen für VEGFR-2 Inhibitoren | Oliver |
| Alexander Thielen | Prediction of B and T cell epitopes | Pierre |
| Nina Fischer | Structure-based prediction of transcription factor-DNA binding free energies using MM/GBSA | Annette |
| Lisa Peltason | Dynamic description of physiological processes with Timed Petri Nets | Oliver |
| Jens Joachim | Automated LC-MS data analysis for differential quantification of MHC ligands using stable isotope labeling | Marc |
| Oliver | ||
| Nina Hämmerle | Homolgy Modeling of Tyrosine Kinases: Implications for Selectivity of VEGF-R2 Inhibitors | Annette |
| Manuel Dietrich | Genome-scale comparison of metabolic networks applied to Escherichia coli and Bacillus subtilis | Oliver |
| Anne Arens | Oliver | |
| Jan Brücker | Statistical Potentials for Protein-DNA Interactions | Annette |
| Manfred Claassen | Structure-based prediction of class I MHC epitopes | Perre |
| Lena Feldhahn | FRED: A Framework for T-Cell Epitope Detection | Pierre |
| Marc Röttig | Klassifikation von Enzymen mittels Support Vector Machines und Partial Least Squares | Oliver |
| Ruijun Shen | Heart Rate Correction Models to Detect QT Interval Prolongation In Novel Pharmaceutical Development | Oliver |
| Sonja Boldt | Neue Verfahren zum Lokalisationsvorhersage von Proteinen: Implementation und experimentelle Analyse | Torsten |
Finished Bachelor's theses/Studienarbeiten
| Name | Project title | Tutor(s) |
|---|---|---|
| Claas aufm Kampe | Predicting subcellular localization of proteins based on their N-terminal amino acid sequence using support vector machines | Pierre |
| Lena Feldhahn | Threading of MHC class I binding peptides | Pierre |
| Nina Fischer | In Silico Mutation of Protein-DNA Complexes | Annette |
| Demetgül Sirim | Integration of biological data | Pierre |
| Jan Brucker | A program for TM helix prediction | Pierre |
| Lisa Peltason | Clustering auf grossen Strukturdatenbanken | Oliver |
| Andreas Bertsch | Implementing a basic set of QSAR descriptors in BALL | Oliver |
| Jochen Supper | Prediction of MHC-binding peptide using DTs and SVMs | Pierre |
| Serhat Saydam | Vergleich von Methoden zur Berechnung der molekularen Elektrostatik | Andreas |
| Roland Pache | PeptID: an algorithm for the identification of peptides from MS/MS spectra in consideration of protein splicing | Pierre/Marc |
| Carsten Henneges | Dataimport from BioCyc | Torsten |
| Christoph Wilke | Predicting chloroplast protein intraorganellar localization using SVMs by encoding physiochemical distributions contained in sequence | Annette |
| Sebastian Schultheiss | Transcriptional Regulation of Stem Cells in Arabidopsis thaliana | Annette |
| Christina Guschelbauer | Predicting Transmembrane Domains using Support Vector Machines | Annette |
| Christine Herold | Computational analysis of the regulation of cancer-related genes | Annette |
| Christoph Malisi | Chloroplast Suborganellar Localization Prediction | Pierre |
| Adrian Schröder | Incorporating SLICK into a GA docking program | Andreas |
| Angela Henzler | A closer look on a predition method for allergens and its application on finding the subcellular localization of proteins | Pierre |
| Michael Betz | Computational chemistry | Annette/Oliver |
| Holger Franken | Oliver | |
| Jüfan Geiger | Using AutoDock for docking lectin-carbohydrate complexes | Andreas |
| Florian Kirchner | Finding binding pockets for sugars | Andreas |
| Michael Knopp | Rigid Protein-Protein docking | Andreas |
| Hedwig Zimmerer | Ring stacking models in lectin sugar docking. | Andreas |
| Thomas Thies | Oliver | |
| Matthias Ziehm | Leveraging structural and sequence information for MHC class I binding prediction | Lena, Nora |
| Stefan Hees | Visualization of HPLC-MS meta data | Marc |
SBS
